Grants by Funder

ARC Academy of Finland (Suomen Akatemia) Alexander von Humboldt-Foundation Alfred P. Sloan Foundation Alfred P. Sloan Foundation American Heart Association American Philosophical Society American Society of Naturalists Arcadia, a charitable fund of Lisbet Rausing and Peter Baldwin Arkansas Audubon Society Arnold Foundation Australian Biological Resources Study Australian Research Council Australian Research Council (ARC) Austrian Science Fund (FWF) BBSRC BWF Belgian Science Policy Office (BELSPO) British Academy CIHR Canadian Institutes of Health Research (CIHR) Canadian Social Sciences and Humanities Research Council (SSHRC) Chan Zuckerberg Initiative Cystic Fibrosis Canada Czech Science Foundation DFG DOE Danish Center for Supercomputing Danish National Science Foundation DoD Dresden Leibniz Graduate School Dutch Fulbright Center EMBO ERC EU Eastern Bird Banding Assocation Ecological Society of America Egypt Excellence Scholarships Endangered Language Documentation Project European Commission European Commission European Community (Framework 7) European Research Commission (ERC-StG-2014) European Union FWF Fondo Nacional de Desarrollo Científico y Tecnológico (FONDECYT) Garden Club of America Heinrich Heine University Düsseldorf IDRC Institute of Museum and Library Services (US) LTER Leakey Foundation Leverhulme Mellon Foundation Moore Foundation Moore foundation Multiple NASA NERC NIH NIH / NIAAA NIH NIDA NSERC NSF NWO National Center for Ecological Analysis and Synthesis National Health and Medical Research Foundation National Institute of Allergy and Infectious Diseases National Institutes of Health National Institutes of Health (US) National Institutes of Health, Department of Health and Human Services (US) National Science Foundation National Science Foundation (NSF) Netherlands eScience Center (NLeSC) New Széchenyi Plan (ÚSZT) [Hungarian] NovoNordiskFonden Prairie Biotic Research, Inc. Purdue University, Susan Bulkeley Butler Center for Leadership Excellence Robert Wood Johnson Foundation (RWJF) SSHRC Shuttleworth Foundation Society of Systematic Biologists Swiss National Foundation Texas Higher Education Coordinating Board The Hungarian Diaspora Council (Nemzeti Regiszter) The Leverhulme Trust The Research Council of Norway The Wellcome Trust Tianqiao and Chrissy Chen Institute for Neuroscience Tzu Chi University College of Medicine, Taiwan Tzuchi University College of Medicine U.S. Geological Survey (USGS) US Geological Survey (USGS) USDA USGS Universidad Nacional de General Sarmiento University of California Natural Reserve System University of Melbourne University of Melbourne and FAPESP WWF Wellcome Trust Wenner-Gren Foundation

ARC

• Evolutionary dynamics of the algae: Understanding adaptive potential under environmental change Heroen Verbruggen, 2012, unfunded
• Probing key innovations with next generation sequencing Heroen Verbruggen, , unfunded

Academy of Finland (Suomen Akatemia)

• Unicorn–Open science for assessing environmental state, human health and regional economy Pekka Neittaanmäki, 2015, unfunded

Alexander von Humboldt-Foundation

• Software quality information needs Daniel Graziotin, 2016, funded

Alfred P. Sloan Foundation

• Unite initiatives and expand the scope of current open source for open science Invest in Open Infrastructure, 2019, funded
• FAIR for Research Software (FAIR4RS) Michelle Barker, 2021, funded
• Vive la différence – research software engineers Michelle Barker and Kimberley Hartley, 2022, funded
• The Research Software Funders Forum Michelle Barker and Daniel S. Katz, 2021, funded
• To support continued development of Manubot, a git-native authoring tool for scientific manuscripts Daniel S. Himmelstein, 2018, funded
• Improving the visibility of scholarly software work James Howison, 2016, funded
• ImpactStory Grant Proposal Heather Piwowar and Jason Priem, 2013, funded
• Improving the visibility of scholarly software work James Howison, Heather Piwowar, and Jason Priem, 2016, funded
• ImpactStory grant proposal Jason Priem and Heather Piwowar, 2013, funded
• Invest in Open Infrastructure Summer Business Fellows, A Collaboration with Harvard Business School Kaitlin Thaney, 2020, funded

Alfred P. Sloan Foundation

• Research Software Alliance: Catalyzing community-led collaborations Michelle Barker, Daniel S. Katz, Kim Hartley, 2024, funded
• Research Software Funders Forum Michelle Barker, Kimberley Hartley, and Daniel S. Katz, 2022, funded

American Heart Association

• Elucidating the role of Plasmodium N-terminal acetyltransferases in export of effectors into the host erythrocyte Alexander J. Polino, 2017, funded

American Philosophical Society

• Do Cultivated Sunflowers Homogenize the Pollinator Communities of, and Selection on, Wild Sunflowers? Scott Chamberlain, 2009, unfunded

American Society of Naturalists

• How do crop-mediated changes in mutualist and antagonist communities affect selection on floral and defense traits? Scott Chamberlain, , unfunded

Arcadia, a charitable fund of Lisbet Rausing and Peter Baldwin

• Impactstory search engine for laypeople Jason Priem and Heather Piwowar, 2018, funded
• Suite of interconnected OurResearch tools Jason Priem and Heather Piwowar, 2020, funded
• Invest in Open Infrastructure operational capacity Kaitlin Thaney, 2023, unknown

Arkansas Audubon Society

• Migratory Stopover Timing, Survival and Habitat Use of Fall Migrating Sora in Managed Wetlands in Missouri Auriel M.V. Fournier, 2014, funded

Arnold Foundation

• Motivating openness with the Impact Report Card Heather Piwowar and Jason Priem, 2016, unfunded
• Tear down this wall: building the Open Research Profile Heather Piwowar and Jason Priem, 2016, unfunded

Australian Biological Resources Study

• Molecular systematics of the siphonous green algae Heroen Verbruggen, 2013, funded

Australian Research Council

• Genome dynamics following plastid endosymbiosis Heroen Verbruggen, 2015, funded

Australian Research Council (ARC)

• Can video improve grant review quality and lead to more reliable ranking? Michael Doran, 2016, unfunded

Austrian Science Fund (FWF)

• Heteroatom quantum corrals and nanoplasmonics in graphene (HeQuCoG) Toma Susi, 2015, funded

BBSRC

• Population Genomics of Retrotransposons in Drosophila Casey Bergman, 2007, unfunded
• pubmed2ensembl: a resource for linking biological literature to genome sequences Casey Bergman, 2008, funded

BWF

• Simultaneous molecular activity recording and transcriptomics of brainwide neural ensembles Christina Kim, 2019, funded

Belgian Science Policy Office (BELSPO)

• Tracking Invasive Alien Species (TrIAS): Building a data-driven framework to inform policy Sonia Vanderhoeven, 2017, funded

British Academy

• British Academy Postdoctoral Fellowship Laura Silva, 2022, funded

CIHR

• Regulation of CRP-S promoters in H. influenzae and E. coli Rosie Redfield, 2007, funded
• Predicting gene transfer in respiratory bacteria Rosie Redfield, 2012, unknown

Canadian Institutes of Health Research (CIHR)

• Widening the circle of care: An arts-based, participatory dialogue with stakeholders on cancer care for First Nations, Inuit, and Métis peoples in Ontario, Canada Chad Hammond, 2016, funded

Canadian Social Sciences and Humanities Research Council (SSHRC)

• Moving beyond mandates: Finding new ways of increasing open access Juan Pablo Alperin, Heather Piwowar, and Jason Priem, 2017, unfunded

Chan Zuckerberg Initiative

• Research Software Alliance proposal Michelle Barker and Daniel S. Katz, 2022, funded
• Genome-wide hypothesis generation for single-cell expression via latent spaces of deep neural networks Casey S. Greene, 2017, TBD
• Growing a Diverse and Inclusive Workflow Ecosystem with CWL - Chan Zuckerberg Initiative Sarah Wait Zaranek, 2021, funded

Cystic Fibrosis Canada

• The Haemophilus DNA Magnet Rosie Redfield, 2012, unknown

Czech Science Foundation

• Uncovering Regulatory Interactions in Cells with Bayesian Statistics Martin Modrák, 2018, unfunded

DFG

• Benefits and costs of aphid phenological bet-hedging strategies Jens Joschinski, 2016,
• Language Science Press: A Publication Model for Open-Access Books in Linguistics Stefan Müller and Martin Haspelmath, 2013, funded
• Continuous and Focused Developer Feedback on Software Quality (CoFoDeF) Stefan Wagner, 2015,

DOE

• A latent variable modeling approach to multi-taxa prediction Kari Norman, 2016, funded

Danish Center for Supercomputing

• Protein Design Using Quantum Mechanics Jan Jensen, 2010, funded

Danish National Science Foundation

• Computational Prediction and Validation of Protein Structure and Function in Protein Engineering and Rational Drug Design Jan Jensen, 2006, funded
• Computational Design of Stable Enzymes Jan Jensen, 2008, funded
• High Througput pKa Prediction Using Semi Empirical Methods Jan Jensen, 2015, funded

DoD

• Regulation of mitochondrial transport in axons of mammalian neurons Emi Ling, 2010, funded

Dresden Leibniz Graduate School

• Analysis of socio-natural hazards generated through rapid unplanned urbanisation in Himalayan towns: A case of Almora, India Neelakshi Joshi, 2016, funded

Dutch Fulbright Center

• Problematic trial detection in ClinicalTrials.gov Chris HJ Hartgerink, 2015,

EMBO

• EMBO Young Investigator Programme Casey Bergman, 2008, unfunded

ERC

• Dynamics of Altruism, Religion and Education Rene Bekkers, 2011, unfunded
• IMMUNENESIS Detlef Weigel, 2013, funded

EU

• Modeling pH-Dependence in Drug Design Jan Jensen, 2006, funded

Eastern Bird Banding Assocation

• USING STABLE ISOTOPES & eBIRD TO ASSESS MIGRATORY CONNECTIVITY OF FALL MIGRATING RAILS Auriel M.V. Fournier, 2015, unfunded

Ecological Society of America

• Mechanisms for the Structure of Sonoran Desert Ant-Plant Mutualistic Communities Scott Chamberlain, , unfunded

Egypt Excellence Scholarships

• Physics of Laser in Contemporary Visual Arts: the research protocol Diaa Ahmed Mohamed Ahmedien, 2013, funded

Endangered Language Documentation Project

• Documenting and describing Kagate, an endangered Tibeto-Burman language of Nepal Lauren Gawne, 2014, funded

European Commission

• FRAXIFAM: Reconstructing gene family evolution in the ash genus (Fraxinus) Endymion Cooper, 2015, funded
• Enabling Open Science: Wikidata for Research (Wiki4R) Daniel Mietchen, 2015, unfunded

European Commission

• The translation of the scientific knowledge needs of stakeholders into relevant and usable health research portfolios David Fajardo Ortiz , 2023, unfunded

European Community (Framework 7)

• Is there a limit to biotic diversification? Insights from stochastic models of speciation and extinction Olivier Missa, 2013, funded

European Research Commission (ERC-StG-2014)

• Strategic Predictions for Quantum Field Theories John Joseph M. Carrasco, 2014, funded

European Union

• Advancing marine conservation in European and contiguous seas with the MarCons Action Stelios Katsanevakis, 2015, funded
• DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe Florian Leese, 2016, funded
• TimeAdapt: Tracking Genetic Adaptation of Populations Using Time-Series Genomic Data Miguel Navascués, 2017, funded
• The Open Biodiversity Knowledge Management System in Scholarly Publishing Viktor Senderov, 2015, funded
• Unifying European Biodiversity Informatics (BioUnify) Vince Smith, 2014, unfunded
• PESFOR-W: Improving the design and environmental effectiveness of woodlands for water Payments for Ecosystem Services Gregory Valatin, 2016, funded

FWF

• Exploring τ sector: nature of lepton flavour and new sources of CP violation Ilya Komarov, 2020, unfunded

Fondo Nacional de Desarrollo Científico y Tecnológico (FONDECYT)

• Applying machine learning and image feature extraction techniques to the problem of cerebral aneurysm rupture Steren Chabert, 2017,

Garden Club of America

• THE USE OF STABLE ISOTOPES, eBIRD AND SPECIES DISTRIBUTION MODELS TO ASSESS MIGRATORY CONNECTIVITY OF FALL MIGRATING RAILS Auriel M.V. Fournier, 2015, funded

Heinrich Heine University Düsseldorf

• Data Intensive Science Nicolas Schmelling, 2017, unfunded

IDRC

• Exploring the opportunities and challenges of implementing open research strategies within development institutions Cameron Neylon and Leslie Chan, 2015, funded

Institute of Museum and Library Services (US)

• Cobweb: A Collaborative Collection Development Platform for Web Archiving Stephen Abrams, 2016, funded

LTER

• Data Management and Computational Skills Training for LTER Scientists Tracy Teal, Ethan White, and Greg Wilson, 2012, unfunded

Leakey Foundation

• Fossil hominin footprints and the dynamics of footprint formation Kevin G. Hatala, 2012, funded

Leverhulme

• Memory enrichment by social context: A virtual reality EEG research project Samantha Gregory, 2018, funded

Mellon Foundation

• Catalyzing investment in and adoption of open infrastructure for research Invest in Open Infrastructure, 2023, funded
• Exploring Hidden Costs of Open Infrastructure Kaitlin Thaney, 2021, funded

Moore Foundation

• Marine metagenomics C. Titus Brown, 2012, funded
• Moore Investigator in Data Driven Discovery C. Titus Brown, 2014, funded
• Moore Investigator in Data Driven Discovery Ethan P. White, 2014, funded

Moore foundation

• Sustaining and Growing the Astropy Project Erik Tollerud, Tom Aldcroft, Kelle Cruz, Thomas Robitaille, 2019, funded

Multiple

• Making sense of cancer data: Implications for personalized therapy and cancer biology B. Arman Aksoy, 2014,

NASA

• Environmental Justice through Open Source Cloud Native Tools: A Racial Legacy Still Visible from Space Carl Boettiger, 2023, funded
• Butterfly: a satellite mission to reveal the oceans' impact on our weather and climate Chelle L. Gentemann, 2021, unknown
• Ciencia Abierta Accesible: Teaching TOPS OpenCore in Spanish MetaDocencia Team; OLS Team, 2023, funded
• Open Science Accesible: Teaching TOPS OpenCore in English OLS Team; MetaDocencia Team, 2023, funded
• Sub-Mesoscale Ocean Dynamics (S-MODE) NASA EVS-3 Proposal J. Thomas Farrar, Ernesto Rodriguez, Eric D’Asaro, Andrey Shcherbina, Paul Matthias, Dudley Chelton, Michelle Gierach, Craig Lee, Luc Lenain, Amala Mahadevan, James C. McWilliams, Ken Melville, Dimitris Menemenlis, Jeroen Molemaker, Pantazis Mouroulis, Melissa Omand, Larry O'Neill, Dragana Perkovic-Martin, Luc Rainville, Roger Samelson, David Thompson, Andrew Thompson, 2018, funded
• Sustaining the Astropy Project Erik Tollerud, Tom Aldcroft, Lia Corrales, Matthew Craig, Kelle Cruz, Adam Ginsburg, Hans Guenther, Pey Lian Lim, Adrian Price-Whelan, John Swinbank, 2020, funded
• Fuelwood, Savannas, and Climate Change: Integrating Modeling, Field Experimentation, and Optical and Radar Remote Sensing Andrew Tredennick, 2011, funded

NERC

• Testing the impact of host demography on transposable element dynamics in Drosophila Casey Bergman, 2008, funded
• Dark taxa: Preparing for a post-taxonomic future Rod Page, 2011,

NIH

• Regulation of Lipid Storage by mTORC1 David Bridges, 2016, funded
• Tissue Specific Inhibition of Diet-Induced Thermogenesis David Bridges, 2016, funded
• Cartwheel: Tools for Regulatory Genomics C. Titus Brown, 2007, unfunded
• A short course in analyzing next-generation sequencing data C. Titus Brown, 2010, funded
• A short course in analyzing next-generation sequencing data C. Titus Brown, 2012, funded
• Computational Analysis of Subclonal Evolution in Chronic Lymphocytic Leukemia Jean Fan, 2015, funded
• The dynamics and impact of R-loops in epigenetic stability and aging Henry E Miller, 2020, funded
• Gene Wiki: Expanding the ecosystem of community intelligence resources Andrew Su, 2014, funded
• Gene Wiki: A community-maintained knowledge base of biomedical information Andrew Su, 2017, funded

NIH / NIAAA

• Probing Inflammation and Reward Sensitivity in Alcohol Use Disorder Elizabeth Burnette, 2020, funded

NIH NIDA

• Top-down regulation of compulsive reward-seeking behavior by medial prefrontal cortex Christina Kim, 2016, funded

NSERC

• Can ocean 'cold spots' enhance resilience to climate change? Joey Bernhardt, 2012, funded
• Bacterial DNA uptake and the evolution of sex Rosie Redfield, 2012, unknown
• Pheromonal communication in widow spiders (genus Latrodectus): investigating the function and identity of silk-bound pheromones and potential management applications Catherine Scott, 2015, funded
• Modifying Memory: The Neural Mechanisms of Adaptive Memory Updating Alyssa H. Sinclair, 2019, funded
• Can noun labels facilitate success on relational match-to-sample with same and different kinds? Rebecca Zhu, 2018, funded

NSF

• Rules of Life governing range shift dynamics of birds and mammals Joseph Alex Baecher, 2023, unknown
• CAREER: What’s next? Developing novel quantitative tools to address conflicting evidence in temporal ecology Christie Bahlai, 2021, funded
• Evolution and Genomics of Ant Caste Megan Barkdull, 2021, funded
• Impacts of Novel Stormwater Management on Groundwater Recharge Aditi S Bhaskar, 2013, funded
• NSF Graduate Research Fellowship Kevin Bird, 2016, funded
• CAREER: Scaling and Improving de Bruijn graph assembly C. Titus Brown, 2011, unfunded
• Materials and Workshops for Cyberinfrastructure Education in Biology C. Titus Brown, 2012, funded
• CAREER: Assembling Extremely Large Metagenomes C. Titus Brown, 2012, unfunded
• Low-memory Streaming Prefilters for Biological Sequencing Data C. Titus Brown, 2012, funded
• The role of diet, physiology, and behavior in thermoregulation and population growth of the invasive monk parakeet (Myiopsitta monachus) Kevin R. Burgio, 2010, funded
• Mechanisms for the Structure of Sonoran Desert Ant-Plant Mutualistic Communities Scott Chamberlain, , unfunded
• The impact of sources of inspiration on the genesis of innovative ideas Joel Chan, 2014, funded
• Do species-environment feedbacks lead to multiple trajectories of ecosystem change? Adam Clark, 2011, funded
• Automated and community synthesis of the tree of life Karen Cranston, 2011, funded
• Using metacommunity theory to assess the impact of multi- species interactions on gut microbial assembly Mauna Dasari, 2021, funded
• Functional Genomics of Maize Centromeres Kelly Dawe, Jeff Ross-Ibarra, James Birchler, Jiming Jiang, Wayne Parrott, Gernot Presting, 2009, funded
• Ectotherm takeover of an endotherm food web: consequences for ecosystem function Introduction and intellectual merit Renata M. Diaz, 2016, funded
• CAREER: Rapid evolution of an invasive plant: the role of microbial interactions Katrina M. Dlugosch, 2017, funded
• NSF Graduate Research Fellowship Danielle H. Drabeck, 2013, unfunded
• Elucidating local archaic ancestry using machine learning Arun Durvasula, 2018, funded
• Reversing long-term experiments to understand regime shifts Morgan Ernest, 2013, funded
• Incorporating time into the study of anthropogenic land use and disease Michelle V. Evans, 2014, not funded
• Vector dynamics and disease transmission across an urban gradient Michelle V. Evans, 2015, funded
• A Bayesian Network Approach for Assessing Factors in Complex Disease Etiology Jean Fan, 2013, funded
• CAREER: Citizens, Conservation, and Climate: Research and Education for Climate Literacy in Managed Landscapes Alejandro N. Flores, 2014, funded
• Timing is everything: Identifying peak Rallidae call rate in southeast Australia Auriel M.V. Fournier, 2015, unfunded
• Controlling the taxonomic variable: Taxonomic concept resolution for a southeastern United States herbarium portal Nico Franz, 2016,
• Collaborative Research: Submesoscale-Resolving Large Eddy Simulations Using Reduced Biogeochemical Models Peter E. Hamlington, Nicole S. Lovenduski, Kyle E. Niemeyer, 2019, funded
• Evolution under simulated climate change in response to trophic shifts Ted Harte, 2008, funded
• Doctoral Dissertation Improvement: Fossil footprints and the dynamics of footprint formation: Implications for the evolution of human gait Kevin G. Hatala, 2012, funded
• Computer Science meets Anthropology: a novel approach for reconstructing locomotion from fossil human footprints Kevin G. Hatala, 2014, funded
• The Prediction and Interpretation of Protein pKa’s Using QM/MM Jan Jensen, 2002, funded
• Prediction and Interpretation of Protein pKa’s Using QM/MM Jan Jensen, 2006, funded
• Microbiome and stress: examining host-microbe responses in ascidians following acute low salinity exposure Lisa K. Johnson, 2016, not funded - honorable mention
• The effects of loss of function mutations over adaptive trajectories in S. cerevisiae (NSF GRFP) Milo Johnson, 2016, funded
• NSF DDRIG: Taxonomic Efficacy of the Macaque Skeleton Brittany Kenyon-Flatt, 2020, funded
• NSF PRFB: Revisiting Homo Taxonomy Brittany Kenyon-Flatt, 2020, funded
• Data-Visual Relationships to Subject Performance and Eye Movements Arno Klein, 2016, unfunded
• Towards a comprehensive, community-owned and sustainable repository of reusable phylogenetic knowledge Hilmar Lapp, William Piel, Michael Donoghue, Mark Westneat, Matt Bietz, Karen Cranston, David Maddison, 2010, unfunded
• Activity-dependent regulation of the RNA-induced silencing complex in mammalian neurons Emi Ling, 2010, funded
• GRFP Application Daniel J. Lurie, 2013, funded
• Dissertation research: The market and the moral economy of Fulani pastoralists in northern Cameroon Mark Moritz, 1999, funded
• CAREER: Pastoral Management of Open Access: The Emergence of a Complex Adaptive System Mark Moritz, 2008, funded
• EEID: Livestock Movements and Disease Epidemiology in the Chad Basin: Modeling Risks for Animals and Humans Rebecca Garabed (PI), Song Liang, Mark Moritz, and Ningshuan Xiao, 2009, funded
• CNH: Exploring social, ecological, and hydrological regime shifts in the Logone Floodplain, Cameroon Mark Moritz, Michael Durand, Ian Hamilton, Bryan Mark, Ningchuan Xiao, 2012, funded
• RAPID: Studying the Effects of Disturbance in a Complex Socioecological System Mark Moritz, 2015, funded
• Effects of rapid evolution on alternative community states at multiple spatial scales Lucas A. Nell, 2022, funded
• A latent variable modeling approach to multi-taxa prediction Kari Norman, 2016, funded
• NSF PRFB: Investigating evolutionary mechanisms that facilitate local adaptation via inversions in the Atlantic silverside Jessica A. Rick, 2021, funded
• The genetics of highland adaptation in maize Jeff Ross-Ibarra, 2015, funded
• Forecasting regime shifts in ecosystems David Seekell, 2010, funded
• Conceptual and Methodological Advancements for Global-Scale Limnological Research David Seekell, 2011, funded
• The Biological Constraints of Learning in Fathead Minnows (Pimphales promelas) Delia Shelton, 2010, funded
• Developing groups and their response to anthropogenic change Delia Shelton, 2016, funded
• Dynamic macroecology: Globally assessing body size diversity response to environmental change Sarah Supp, 2014, funded
• How do nomadic species and their pathogens respond to changing resource distributions? Claire S. Teitelbaum, 2016, funded
• Diversity-stability relationships and coexistence: new theory and empirical tests Andrew Tredennick, 2014, funded
• A Digital Repository for Preservation and Sharing of Data Underlying Published Works in Evolutionary Biology Todd Vision, 2008, funded
• Sustainable and Scalable Infrastructure for the Publication of Data Todd Vision, 2012, funded
• Broad-scale patterns of the distribution of body sizes of individuals in ecological communities Ethan P. White, 2005, funded
• Understanding multimodality in animal size distributions Ethan P. White, 2008, funded
• CAREER: Advancing Macroecology Using Informatics and Entropy Maximization Ethan P. White, 2010, funded
• Use of morphological data for estimation of phylogenetic trees April M. Wright, 2013, funded
• Fossilized Birth-Death Dating in Formicidae April M. Wright, 2016, funded
• Coevolution and co-divergence in a classical obligate mutualism between Joshua tree (*Yucca brevifolia*) and its pollinators (*Tegeticula* spp.) Jeremy B. Yoder, 2008, funded
• CAREER: Supervised Learning for Uncertain and Incomplete Data Alina Zare, 2013, funded
• NSF Graduate Research Fellowship Sam Zorowitz, 2018, funded

NWO

• Global Giving Rene Bekkers, 2019, unfunded
• Has frugivory influenced the macroecology and diversification of a tropical keystone plant family? W. Daniel Kissling, 2016, funded
• Exotic forms of matter Patrick Koppenburg, 2017, unfunded
• Development and application of Massive Barcode-based Biodiversity Assessment (MBBA); a novel method for rapid estimation of species diversity Menno Schilthuizen, 2007, unfunded
• PhD Fellowship Menno Schilthuizen, 2009, funded
• Determinants of species diversity at 14 spatial scales in tropical microsnails from endangered limestone habitats Menno Schilthuizen, 2010, funded
• Evo-devo of chirality in insect genitalia Menno Schilthuizen, 2011, unfunded
• Sexual selection and the evolution of coiling direction in snails (Mollusca: Gastropoda) Menno Schilthuizen, 2014, unfunded

National Center for Ecological Analysis and Synthesis

• Evolution under simulated climate change in response to trophic shifts Ted Harte and Scott Chamberlain, 2008, unfunded

National Health and Medical Research Foundation

• Meta-research: Using research to increase the value of health and medical research Adrian G. Barnett, 2016, funded

National Institute of Allergy and Infectious Diseases

• Elucidating the role of Plasmodium N-terminal acetyltransferases in export of effectors into the host erythrocyte Alexander J. Polino, 2017, unfunded (Scored 20; Payline was 19)

National Institutes of Health

• International Clinics on Infectious Disease Dynamics and Data Juliet R.C. Pulliam, 2012, funded
• Gene-by-environment interactions that affect exposure-mediated congenital heart disease Andrew Whitehead, 2021, funded

National Institutes of Health (US)

• Metabolomics Evaluation of the Etiology of Pneumonia Lilliam Ambroggio, 2016, funded
• High-throughput, multiplexed characterization and modeling of antibody:antigen binding, with application to HSV Benjamin Delbert Brooks, 2016, funded
• The role of wcjE disruption in pneumococcal serotype 11A humoral escape Juan Calix, 2010, funded
• Antibiotics for Recalcitrant Infection Kenneth Coleman, 2014, funded
• The semen enhancer of HIV infection as a novel microbicide target Stephen Dewhurst, 2010, funded
• Development of a Novel Inhibitor of Ricin: A Potential Therapeutic Lead against Deadly Shiga and Related Toxins Artem Domashevskiy, 2016, funded
• Mechanisms of enteric Burkholderia psuedomallei infection Steven W. Dow, 2010, funded
• Inflammatory cascades disrupt Treg function through epigenetic mechanisms William Faubion, 2015, funded
• Novel indication for myeloid progenitor use: Induction of tolerance Timothy C. Fong, 2013, funded
• Broadly protective (universal) virus-like particle (VLP) based influenza vaccine Jose M. Galarza, 2013, funded
• Hair Extensions: Using Hair Levels to Interpret Adherence, Effectiveness and Pharmacokinetics with Real-World Oral PrEP, the Vaginal Ring, and Injectables Monica Gandhi, 2017, funded
• Rapid Test for Recent HIV Infection Patricia Garrett, 2014, funded
• Assessing the roles of biofilm structure and mechanics in pathogenic, persistent infections Vernita Gordon, 2017, funded
• Antigen Detection assay for the Diagnosis of Melioidosis Raymond Houghton, 2014, funded
• Intersection of polyomavirus infection and host cellular responses Mengxi Jiang, 2015, funded
• Modeling atomic structure of the EmrE multidrug pump to design inhibitor peptides Martin Karplus, 2014, funded
• Concurrence Topology: Finding High-Order Dependence in Neuropsychiatric Data Arno Klein, 2013, unfunded
• Visual Parkinson’s Disease Rating Scale: A Universal Iconic Questionnaire for Epidemiological Studies in India Arno Klein, 2016, unfunded
• Crowdsourcing voice editing and quality assessment of data collected from the largest mobile phone-based research study of Parkinson disease Arno Klein, 2016, unfunded
• Brain Graph Interface Arno Klein, 2016, unfunded
• A game for crowdsourcing the segmentation of BigBrain data Arno Klein, 2016, unfunded
• Graph-based clinical diagnosis and prediction using multi-modal neuroimaging data Arno Klein, 2016, unfunded
• Enhance AAV Liver Transduction with Capsid Immune Evasion Chengwen Li, 2015, funded
• Experimental Gonococcal Vaccine Yingru Liu, 2016, funded
• Point-of-Care HIV Antigen/Antibody Diagnostic Device Michael J. Lochhead, 2013, funded
• Antibody Mediated Mechanisms of Immune Modulation in Tuberculosis Lenette Lu, 2016, funded
• Human immune system layering and the neonatal response to vaccines Joseph M. McCune, 2010, funded
• Peptide Autoinducers of Staphylococcal Pathogenicity Tom Muir, 2016, funded
• Ribosome profiling of Trypanosoma brucei Peter John Myler, 2010, funded
• Lymphoid signals for stromal growth and organization in the thymus. Howard T. Petrie, 2011, funded
• Rapid, automated, detection of viral and bacterial pathogens causing meningitis Mark Poritz, 2016, funded
• Elucidating the evolution of Coxiella to uncover critical metabolic pathways Rahul Raghava, 2016, funded
• Forward genetics-based discovery of Histoplasma virulence genes Chad A. Rappleye, 2013, funded
• The HIV Care Continuum and Health Policy: Changes through Context and Geography Peter Rebeiro, 2017, funded
• Characterization of Antibody-Dependent Cellular Cytotoxicity in HIV Infection Adjoa R. Smalls-Mantey, 2011, funded
• Lead Compound Discovery from Engineered Analogs of Occidiofungin James Smith, 2016, funded
• Alteration of host protein stability by Legionella Michael N. Starnbach, 2011, funded
• Neural Systems for Infant Sensitivity to Phonological Rhythmic-Temporal Patterning Adam Stone, 2016, funded
• Defining clinical and sterile immunity to Plasmodium falciparum infection using systems biology approaches Tuan Manh Tran, 2016, funded
• Developing a small peptide to control autoimmune inflammation in type 1 diabetes David H. Wagner, 2016, funded

National Institutes of Health, Department of Health and Human Services (US)

• The value of statistical tools to detect data fabrication Chris HJ Hartgerink, 2016,

National Science Foundation

• Effect of community interactions in the scaling of microbial processes Brittni L. Bertolet, 2021, funded
• Investigating fire-biotic disturbance interactions and their sensitivity to climate in the North American boreal biome Katherine Hayes, 2022, funded
• DISES: Valuing and managing anthropized ecosystems: Primary and secondary services provided by stormwater ponds in urban landscapes. Alexander J. Reisinger, Hayk Khachatryan, H. Dail Laughinghouse IV, P. Monaghan, and O. Savchencko., 2022, funded
• CAREER: Quantitative assessment of models for phylogenetic data April M. Wright, 2020, funded

National Science Foundation (NSF)

• Investigating the value of automatically-gathered software impact data Heather Piwowar and Jason Priem, 2013, funded

Netherlands eScience Center (NLeSC)

• eEcoLiDAR, eScience infrastructure for ecological applications of LiDAR point clouds: reconstructing the 3D ecosystem structure for animals at regional to continental scales W. Daniel Kissling, 2017, funded

New Széchenyi Plan (ÚSZT) [Hungarian]

• Tools of Persuasion in Visual Advertisements at Maltese Sites of Cultural Tourism: A Social Science Analysis János Tóth, 2012, funded

NovoNordiskFonden

• A framework for an open and scalable infrastructure for health data exemplified by the DD2 initiative Luke W. Johnston, Alisa Devedzic Kjærgaard, Annelli Sandbæk, 2021, funded

Prairie Biotic Research, Inc.

• Pollinator communities of crop and wild sunflowers Scott Chamberlain, 2010, funded

Purdue University, Susan Bulkeley Butler Center for Leadership Excellence

• Preferred Names: Advancing Inclusivity in Purdue University's Digital Platforms Dada Docot, 2021, unfunded

Robert Wood Johnson Foundation (RWJF)

• The oaBoost dashboard: Motivating OA from a researcher-centric perspective Heather Piwowar and Jason Priem, 2017, unfunded

SSHRC

• Banting Postdoctoral Fellowship Laura Silva, 2021, funded

Shuttleworth Foundation

• Shuttleworth Fellowship Application Donat Agosti, 2016, unfunded
• Shuttleworth Fellowship Application Mad Price Ball, 2017, funded

Society of Systematic Biologists

• The progression of aridity in Africa and its effects on plant evolution Cody Coyotee Howard, 2018, funded

Swiss National Foundation

• Postdoc.Mobility Fellowship Laura Silva, 2022, funded

Texas Higher Education Coordinating Board

• Ecological and evolutionary impacts of pollinator sharing between cultivated and wild sunflowers Scott Chamberlain, 2009, unfunded

The Hungarian Diaspora Council (Nemzeti Regiszter)

• Historical analysis of strategies for assimilation and identity maintenance in dispersed groups of overseas Hungarians and their relevance regarding national policy planning János Tóth, 2015, unfunded

The Leverhulme Trust

• ​Leverhulme Study Abroad Studentship Laura Silva, 2019, funded

The Research Council of Norway

• Deciphering bioluminescent communication in marine annelids Ragnhild Irene Jacobsen, 2021, unfunded
• Funding application (RCN, 2022): Deciphering bioluminescent communication in marine annelids Ragnhild Irene Jacobsen, 2022, unfunded

The Wellcome Trust

• ContentMine/Hypothes.is Proposal Peter Murray-Rust, 2016, unfunded
• Open Neuroimaging Laboratory Amy Robinson and Roberto Toro, 2016, partially funded
• Roadmap: A Research Data Management Advisory Platform Stephanie Simms, 2016, unfunded
• SCINDR - The SCience INtroDuction Robot that will Connect Open Scientists Chase Smith, 2016, unfunded
• Paperity Central: An Open Catalog of All Scholarly Literature Marcin Wojnarski, 2016, unfunded

Tianqiao and Chrissy Chen Institute for Neuroscience

• ERGo! – a citizen science initiative aimed at allowing scientific novices to make electroretinograms, thereby identifying new insect species for subsequent comparative studies of visual physiology and ecology. Daniel Pollak, 2021, funded

Tzu Chi University College of Medicine, Taiwan

• Clinical roles of soluble ST2 for the outcomes of cardiac valve operations Robert Jeenchen Chen, 2016,

Tzuchi University College of Medicine

• Bi-directional immuno-modulation by Matrix Metalloproteinase-7 (MMP-7) and A Disintegrin And Metalloproteinase-17 (ADAM-17) as transplantation rejection-tolerance spectrum Robert Jeenchen Chen, 2016,

U.S. Geological Survey (USGS)

• Applying radiogenic isotope geochemistry to enhance geologic framework models Ryan E. Frazer, 2019, funded

US Geological Survey (USGS)

• Scale mismatches in ecological research and management: consequences and solutions through data management Jessica L. Burnett, 2018, unfunded
• Using Integrated Population Modelling in Decision-support Tools to Connect Science and Decision Makers Jessica L. Burnett, 2019, funded

USDA

• Web tools for next-gen sequence analysis C. Titus Brown, 2009, funded
• Scanning for yield: high-throughput discovery of candidate agronomic loci for marker-assisted selection in maize Jeff Ross-Ibarra, 2009, funded

USGS

• Ariel Appleton Research Fellowship Proposal - Ecological Networks Scott Chamberlain, , unfunded

Universidad Nacional de General Sarmiento

• Redes de interacciones ecológicas, la influencia del cambio global y la degradación del hábitat Leonardo A. Saravia, 2019, funded

University of California Natural Reserve System

• Mathias Graduate Student Research Grant William K. Petry, 2014, funded

University of Melbourne

• Genomic tools to study coral reef resilience Heroen Verbruggen, 2012, funded

University of Melbourne and FAPESP

• Marine genomics: Genome biology and evolution of key primary producers Heroen Verbruggen, 2015, funded

WWF

• Kathryn Fuller Doctoral Fellowship Proposal Scott Chamberlain, , unfunded

Wellcome Trust

• FAIR for Research Software projects Michelle Barker, 2020, funded
• Seeing the forest and the trees: understanding the contribution of both axonal and glial activity-dependent plasticity in neural circuit Adna S. Dumitrescu, 2020, unfunded
• Open, complete, disambiguated database of authorship metadata in biomedicine Heather Piwowar and Jason Priem, 2018, unfunded

Wenner-Gren Foundation

• A novel experimentally-based investigation of Plio-Pleistocene fossil hominin footprints Kevin G. Hatala, 2012, funded